PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G1333
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 289aa    MW: 31289.6 Da    PI: 6.5888
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G1333genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.87.7e-111154344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      W+ e d+ + +a + ++ +   +W++Ia+ ++ g+tl+++k ++
      Gh_D12G1333 11 EWSREQDKAFENALATYPEDtsdRWEKIAADVP-GKTLEEIKQHY 54
                     7********************************.**********9 PP
2Myb_DNA-binding43.95.7e-14122166347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
      Gh_D12G1333 122 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.604762IPR017884SANT domain
SMARTSM007171.8E-10860IPR001005SANT/Myb domain
SuperFamilySSF466896.7E-121066IPR009057Homeodomain-like
PfamPF002492.9E-81154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-51155IPR009057Homeodomain-like
CDDcd001671.57E-91157No hitNo description
PROSITE profilePS5129417.61114171IPR017930Myb domain
SuperFamilySSF466898.28E-17117172IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-17119169IPR006447Myb domain, plants
SMARTSM007174.5E-11119169IPR001005SANT/Myb domain
PfamPF002497.1E-12122166IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-11122165IPR009057Homeodomain-like
CDDcd001671.19E-10122167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MTVDEASNSS EWSREQDKAF ENALATYPED TSDRWEKIAA DVPGKTLEEI KQHYELLEDD  60
VNRIESGCVP LPAYSSSEGS TCHAGDEVTS KKGSDHLGHF NSESDHGSKN SRSDQERRKG  120
IAWTEDEHRL FLLGLEKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSINKDRRRS  180
SIHDITSVGN GEILATQGPI TGEPNGAATG GSSAKSAKQP SQLPAAPPGV SMYSSPTIGQ  240
PIGGPLVSTV GTPVNLPAPP HLAYGAVVPT APMNMGPVKY SMPHKSDHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-1912801179RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.200900.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438079.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_012438080.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_012438081.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_012438082.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_012438083.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H72e-66DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0D2PV850.0A0A0D2PV85_G
STRINGGLYMA07G28310.11e-157(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35562861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-123MYB family protein